Bioimaging and Spatial Statistics Group

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Medical Imaging

  • dcemri: Quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI) and diffusion-weighted imaging (DWI) for oncology applications. (github version)
  • oro.nifti: Data input/output functions for data that conform to the Digital Imaging and Communications in Medicine (DICOM) standard, part of the Rigorous Analytics bundle.
  • LST: A Lesion Segmentation Tool for SPM
  • dcemriSpatEnet: Spatial Elastic Net for DCE-MRI data
  • cmr: cardiac magnetic resonance imaging in R

Biological imaging

  • bioimagetools: An R package toolbox for 3d and 4d (microscopy) images
  • nucim: Nucleome Imaging Toolbox. R package for quantitative analyses of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy
  • MAPPOS: Machine learning Algorithm for Particle POSt-picking

Bayesian Age-Period-Cohort Modelling

  • BAMP: Bayesian Age-Period-Cohort Modelling and Prediction

Functional Data

  • funData: An S4 class for functional data.
  • MFPCA: Multivariate Functional Pricipal Component Analysis for Data Observed on Different (Dimensional) Domains.